| 219 | | X = raw local putative-nucleosome dyad incidence in a window W (=11)[[BR]] |
| 220 | | Y = raw putative-nucleosome read coverage[[BR]] |
| 221 | | L = local dyad positioning score = "raw local putative-nucleosome dyad incidence in a window 'W'" divided by "raw putative-nucleosome read coverage"[[BR]] |
| 222 | | B = Bayes factor = P( 1/2 ) / P( (1+2W) / 147 ), where P(q) = nCj q^j^ (1-q)^(n-j)^[[BR]] |
| | 219 | Nucleosome dyad incidence: the number of putative nucleosome dyads in the region within a full turn of the helix (11bp) distance from the position [BR]] |
| | 220 | Nucleosome core coverage: the number of putative nucleosome cores that intersect with the region defined above [[BR]] |
| | 221 | Local dyad positioning score: "Nucleosome dyad incidence" divided by "Nucleosome core coverage"[[BR]] |
| | 222 | Predicted nucleosome position: Nucleosome occupancy predicted by the method proposed in E. Segal et al., Nature 442, 772 (Aug 17, 2006).[[BR]] |
