Changes between Version 51 and Version 52 of UTGBMedaka/Track


Ignore:
Timestamp:
09/05/07 23:08:23 (18 years ago)
Author:
kobayashi
Comment:

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  • UTGBMedaka/Track

    v51 v52  
    55[[PageOutline]]
    66
     7== Zooming Track ==
     8
     9[[Image(image029.jpg)]]
     10
     11Both the ruler track and the zooming track are displaying same contents with different color. These two show the base position number of the present displayed content with respect to the total sequence.
     12
     13 If you click any position on the zooming track, clicked position will be centered and zoom in the region two times.
     14
    715== Overview Track ==
    816
    … …  
    1826The details of this track is described here: http://medaka3.utgenome.org/~kobayashi/UTGBmedakaHELP/ChromosomeOverView.html
    1927
    20 == Ruler and Zooming Tracks ==
    21 
    22 [[Image(image029.jpg)]]
     28== Base Color Track ==
     29
     30[[Image(image032.jpg)]]
     31
     32[[Image(image033.jpg)]]
     33
     34Base color track changes the sequence to color mode. All four ATGC bases are displayed by converting to the individual color. It is natural to display each base pair by one pixel. By zooming in, you can see any specific region of the sequence in alphabet symbol (above bottom image).
     35
     36It is also possible to customize the corresponding base pair color also. For example, if GC base pair are only colored then we can use it as a simple GC content track. To get the sequence itself, it is better to save from fasta track.
     37
     38== Ruler Track ==
    2339
    2440[[Image(image030.jpg)]]
    2541
    26 Both the ruler track and the zooming track are displaying same contents with different color. These two show the base position number of the present displayed content with respect to the total sequence.  If you click any position of the ruler track, the viewpoint will move to the middle position. For example, if the rightmost end of the ruler track is clicked then the same effect will be happed as the [[Image(ff.png)]] button of main screen is pressed. Before using the zoom button on main screen, it is better to have the required region on middle position by using the ruler track to smoothing future enlarge processing.
    27 
    28 In addition to the effect of the ruler track, if you click any position on the zooming track then two times zoom will be happened. For example, it is same to click the central button on zoom track as the zoomin.png button on main screen. On the other hand, it is also same to clicking the rightmost end of the zooming track as click ff.png then click zoomin.png on main screen. This track is useful to zoom out our interested region on the sequence..
    29 
    30  
    31 == Base Color Track ==
    32 
    33 [[Image(image032.jpg)]]
    34 
    35 [[Image(image033.jpg)]]
    36 
    37 Base color track changes the sequence to color mode. All four ATGC bases are displayed by converting to the individual color. It is natural to display each base pair by one pixel. By zooming in, you can see any specific region of the sequence in alphabet symbol (above bottom image).
    38 
    39 It is also possible to customize the corresponding base pair color also. For example, if GC base pair are only colored then we can use it as a simple GC content track. To get the sequence itself, it is better to save from fasta track.
     42Both the ruler track and the zooming track are displaying same contents with different color. These two show the base position number of the present displayed content with respect to the total sequence.
     43
     44If you click any position of the ruler track, the viewpoint will move to the middle position. Before using the zoom button on main screen, it is better to have the required region on middle position by using the ruler track to smoothing future enlarge processing.
    4045
    4146== Quality Value Track ==