Changes between Version 32 and Version 33 of UTGBMedaka/Track


Ignore:
Timestamp:
08/16/07 03:00:37 (18 years ago)
Author:
kobayashi
Comment:

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  • UTGBMedaka/Track

    v32 v33  
    104104This track displays medaka genes predicted on Ensembel(ref) pipe line. The gene region is displayed by line and the bac ends are shown in rectangular box. The arrow sign shows the plus or minus strand of the genome.
    105105
    106 This track is an alias of the Ensembl transcript model predictions in http://www.ensembl.org/Oryzias_latipes/index.html Ensembl Medaka.  The mapping region for the gene is displayed by line and the exons are shown in rectangular box. The arrow shows the plus or minus strand of the genome.
     106This track is an alias of the Ensembl transcript model predictions in http://www.ensembl.org/Oryzias_latipes/index.html Ensembl Medaka.  The mapping region for the gene is displayed by line and the exons are shown in rectangular box. The arrow shows the direction of the predicted transcript.
    107107
    108108The current data sources are Ensembl44.
     
    128128[[Image(ChromosomeOverView.jpg)]]
    129129
    130 This track shows the location of presently displayed scaffold on the chromosome. In the above image, for instance, the blue-colored box shows the position of scaffold100 on chromosome 6, which is represented in the yellow bar. Click on any position of this track will bring you to the chromosome view. The next scaffolds are indicated at the both end of yellow bar.  Click on the scaffold name shown in light blue to move to the view of the corresponding scaffold.
     130This track shows the location of presently displayed scaffold on the chromosome. In the above image, for instance, the blue-colored box shows the position of scaffold100 on chromosome 6, which is represented in the yellow bar. Click on any position of this track will bring you to the chromosome view (see below). The next scaffolds are indicated at the both end of yellow bar.  Click on the scaffold name shown in light blue to move to the view of the corresponding scaffold.
    131131
    132132The details of this track is described here: http://medaka3.utgenome.org/~kobayashi/UTGBmedakaHELP/ChromosomeOverView.html