Changes between Version 7 and Version 8 of UTGBManual

Timestamp:

08/15/07 15:47:38 (18 years ago)

Author:

leo

Comment:

--

UTGBManual

@@ -74 +74 @@
 You can input values into the input boxes (like above image) inside the main window. The details about this method are as follows,
 
- Species: Select the species to display. The selectable revisions would be changed with respect to the species. At present, only Medaka is possible to be selected.
-
- Revision: Select the revision of the target specie’s genome. For Medaka, the revision name format is yyyymm. The selecting topics will change with respect to the selected revision.
-
-ü         Target: Select the target region to be displayed, from the selected species and selected revision. In the case of 200406 revision of Medaka, only scaffold name (e.g. scaffold123) can be selected but not the chromosome name (e.g. chr10). Chromosome numbers will be available in our later revision.
-
-ü         Start: Select the start position from your targeted sequence to display. The number should be 1-origin (i.e. the starting point will be 1).
-
-ü         End: Select the end point from your targeted sequence to display. The number should be 1-origin. If the ending point is greater than the starting point then the display will be normal. Otherwise, the display will be reverse. In both cases, the ending base will be included in the displaying sequence.
+ Species:: Select the species to display. The selectable revisions would be changed with respect to the species. At present, only Medaka is possible to be selected.
+
+ Revision:: Select the revision of the target specie’s genome. For Medaka, the revision name format is yyyymm. The selecting topics will change with respect to the selected revision.
+
+ Target:: Select the target region to be displayed, from the selected species and selected revision. In the case of 200406 revision of Medaka, only scaffold name (e.g. scaffold123) can be selected but not the chromosome name (e.g. chr10). Chromosome numbers will be available in our later revision.
+
+ Start:: Select the start position from your targeted sequence to display. The number should be 1-origin (i.e. the starting point will be 1).
+
+ End:: Select the end point from your targeted sequence to display. The number should be 1-origin. If the ending point is greater than the starting point then the display will be normal. Otherwise, the display will be reverse. In both cases, the ending base will be included in the displaying sequence.
 
 ü         Width: Input the width in terms of pixels for output track display. Input the value that is suitable for your vision. Normally, it is assumed that width is equal to the screen width. It is also possible to input the width as 10 times bigger than the screen width. In that case, it seems to be convenient to use the scroll of the browser.