| 138 | | = Display setting = |
| 139 | | [[Image(image037.jpg)]] |
| 140 | | |
| 141 | | If the [[Image(cfg.png)]] button on the left side of Mapped Gene Track is pressed, the display setting windows will pop up. There are three parts of this setting; namely, changing the total display style, alternating the mapping results if a gene will be displayed or not, and modifying the color of a gene. The setting, whether to show or not, will display all which fulfill the conditions. The color setting can be done by “use this color” button beside the track. |
| | 138 | = Display configuration = |
| | 139 | |
| | 140 | If the [[Image(cfg.png)]] button on the left side the Track is pressed, the display setting windows will pop up. |
| | 141 | There are three parts of this setting; namely, changing the total display style, alternating the mapping results if a gene will be displayed or not, and modifying the color of a gene. The setting, whether to show or not, will display all which fulfill the conditions. The color setting can be done by “use this color” button beside the track. |
| | 142 | |
| | 143 | |
| | 144 | '''BAC end tarck and Fosmid end track'''[[BR]] |
| | 145 | |
| | 146 | [[Image(BAC_Fosmid_config.png)]] |
| | 147 | |
| 165 | | === !FromSpecies disp setting === |
| 166 | | |
| 167 | | Here we can set which species among Medaka, Zebra fish, Fugu’s mapping results are displayed or not. On default, all species results will be displayed. Only the species, which are checked on the Checkbook, will be displayed. |
| 168 | | |
| 169 | | === !FromSpecies color setting === |
| 170 | | |
| 171 | | The color distinguishing for Medaka, Zebra fish, Fugu’s can be done here. |
| 172 | | |
| 173 | | === !MatchRatio gradation setting === |
| 174 | | |
| 175 | | Gene’s color can be changed with respect to its match ratio. Provided colors for the match ratios 0.7 and 1.0 respectively, the system automatically gradates the coloring of the alignments between the lower and upper match ratios. |
| 176 | | |
| 177 | | === !MatchRatio ulbound setting === |
| 178 | | |
| 179 | | You can specify the range of the mapping ratio by inputting the lower and upper bounds into the corresponding boxes. Alignments of match ratios within the range are only displayed. |
| 180 | | |
| 181 | | === !CoverRatio gradation setting === |
| 182 | | |
| 183 | | Gene’s color can also be changed with respect to its cover ratio. Provided colors for the cover ratios 0.4 and 1.0 respectively, the system automatically gradates the coloring of the alignments between the lower and upper cover ratios. |
| 184 | | |
| 185 | | === !CoverRatio upper/lower bound setting === |
| 186 | | |
| 187 | | You can specify the range of the cover ratio by inputting the lower and upper bounds into the corresponding boxes. Alignments of cover ratios within the range are only displayed. |
| 188 | | |
| 189 | | === Stage disp setting === |
| 190 | | |
| 191 | | * Here, you can fix which development stage’s expression EST should be displayed. |
| 192 | | |
| 193 | | === Stage color setting === |
| 194 | | |
| 195 | | * Color distinguishing can be done with respect to development stage. |
| 196 | | |
| 197 | | === Linkage for each gene === |
| 198 | | |
| 199 | | In full, pack and small style, each gene can be clicked on. By clicking each gene, you can see the details of this gene. |
| 200 | | |
| 201 | | |
| 202 | | |
| 203 | | |
