Changes between Version 38 and Version 39 of UTGBManual


Ignore:
Timestamp:
09/04/07 18:31:11 (18 years ago)
Author:
kobayashi
Comment:

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  • UTGBManual

    v38 v39  
    1818= Keyword Search =
    1919
    20 [[Image(Online_mapping.png)]]
     20[[Image(Search_top2.png)]]
    2121
    2222The top window displays the keyword search engine, as above picture illustrates. Inputting any keyword at the query box, we can see the detail information about the query. More about keyword search can be found in the help, written on the same window. In addition, if the keyword is a part of targets, then all the targets will be displayed. For example, the keyword “BCD” will match to “ABCD”, “BCDE”, “BCD” and “BCDF” etc. (this is worked out with using a suffix array.)
    … …  
    3030= Sequence Alignment =
    3131
    32 [[Image(online01.PNG)]]
     32[[Image(Online_mapping.PNG)]]
    3333
    3434Sequence mapping is possible by inputting a sequence in the online mapping frame (above image) at the bottom of the main window. After selecting the species and its revision, press the search button on the bottom. The request is sent to the alignment server ALPS to align the given sequence to the selected genome. Afterwards, the list of alignment results is returned if the system finds some alignments.