Changes between Initial Version and Version 1 of Devel/Migration

Timestamp:

10/02/07 11:20:43 (18 years ago)

Author:

leo

Comment:

--

Devel/Migration

@@ +1 @@
+= Migration =
+Migration tips from OldUTGB (before 2007 Sep.) to the new UTGB.
+
+ * Extract track information 
+{{{
+for db in $(psql -U postgres -l | grep trackinformation | cut -f 2 -d ' '); do psql -U postgres -l $db -A -t -c "select name, species, revision, data_location from track where exhibit = 'public'" >> tracklist.dat; done; 
+}}}
+
+ * dev.utgenome.org
+{{{
+leo@utgb:~/work> cat tracklist.dat 
+5pSageDme|drosophila|R4.1|http://dev.utgenome.org/~utgb/drosophila/tracks/R4.1/5pSageDme.xml
+5pSageDmw|drosophila|R4.1|http://dev.utgenome.org/~utgb/drosophila/tracks/R4.1/5pSageDmw.xml
+FlyBaseCDS|drosophila|R4.1|http://dev.utgenome.org/~utgb/drosophila/tracks/R4.1/FlyBaseCDS.xml
+FlyBaseTranscript|drosophila|R4.1|http://dev.utgenome.org/~utgb/drosophila/tracks/R4.1/FlyBaseTranscript.xml
+GSvector|drosophila|R4.1|http://dev.utgenome.org/~utgb/drosophila/tracks/R4.1/GSvector.xml
+solexaDroso|drosophila|R4.1|http://dev.utgenome.org/~utgb/drosophila/tracks/R4.1/5pSageSolexa.xml
+cdna0713_1|human|hg18|http://dev.utgenome.org/~utgb/humanSuzuki/tracks/hg18/cdna0713_1.xml
+refSeqGenes|human|hg18|http://dev.utgenome.org/~utgb/humanSuzuki/tracks/hg18/refseqHg18.xml
+Overview Track|human|hg18|http://dev.utgenome.org/~utgb/human/genome_browser/tracks/overview/overview.xml
+Refseq Genes|human|hg18|http://dev.utgenome.org/~utgb/human/genome_browser/tracks/refseq/refseq.xml
+Ruler Track|human|hg18|http://dev.utgenome.org/~utgb/human/genome_browser/tracks/ruler/rulertrack.xml
+SolexaEcoP5pSAGE|human|hg18|http://dev.utgenome.org/~utgb/human/tracks/hg18/SolexaEcoP5pSAGE.xml
+SolexaSonicP5pSAGE|human|hg18|http://dev.utgenome.org/~utgb/human/tracks/hg18/SolexaSonic5pSAGE.xml
+Zooming Track|human|hg18|http://dev.utgenome.org/~utgb/human/genome_browser/tracks/zoomer/zoomertrack.xml
+refseqEcoP5pSAGE|human|hg18|http://dev.utgenome.org/~utgb/human/tracks/hg18/refseqEcoP5pSAGE.xml
+smn|human|hg18|http://dev.utgenome.org/~utgb/human/tracks/hg18/smn.xml
+BaseColor|human|hg17|http://dev.utgenome.org/~utgb/human/genome_browser/tracks/basecolor/basecolortrack.xml
+Overview Track|human|hg17|http://dev.utgenome.org/~utgb/human/genome_browser/tracks/overview/overview.xml
+Refseq Genes|human|hg17|http://dev.utgenome.org/~utgb/human/genome_browser/tracks/refseq/refseq.xml
+Ruler Track|human|hg17|http://dev.utgenome.org/~utgb/human/genome_browser/tracks/ruler/rulertrack.xml
+SolexaMethylation|human|hg17|http://dev.utgenome.org/~utgb/human/tracks/hg17/MethylationAll.xml
+SolexaMethylationR5|human|hg17|http://dev.utgenome.org/~utgb/human/tracks/hg17/MethylationR5All.xml
+Zooming Track|human|hg17|http://dev.utgenome.org/~utgb/human/genome_browser/tracks/zoomer/zoomertrack.xml
+5End0920|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/5End0920.xml
+5EndTrack|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/5End.xml
+BaseColor|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/basecolortrack.xml
+Overview Track|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/overview.xml
+RepeatMasker|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/Repeat.xml
+Ruler Track|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/rulertrack.xml
+Zooming Track|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/zoomertrack.xml
+chinaESTmap|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/chinaEst.xml
+fosmidEnd|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/fosmidEnd.xml
+norESTmap|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/Est.xml
+predictedGene|kaiko|build2|http://dev.utgenome.org/~utgb/kaiko/tracks/build2/predictedGene.xml
+Fugu|medaka|version1.0|http://dev.utgenome.org/~utgb/medaka/tracks/version1.0/Fugu.xml
+Overview Track|medaka|version1.0|http://dev.utgenome.org/~utgb/medaka/genome_browser/tracks/overview/overview.xml
+Ruler Track|medaka|version1.0|http://dev.utgenome.org/~utgb/medaka/genome_browser/tracks/ruler/rulertrack.xml
+Zooming Track|medaka|version1.0|http://dev.utgenome.org/~utgb/medaka/genome_browser/tracks/zoomer/zoomertrack.xml
+BacEnds|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/BacEnds.xml
+BaseColor|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/basecolortrack.xml
+Coverage|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/Coverage.xml
+FosmidEnds|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/FosmidEnds.xml
+GCcontent|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/GCcontent.xml
+Overview Track|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/overview.xml
+QualityValue|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/QualityValue.xml
+Ruler Track|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/rulertrack.xml
+Zooming Track|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/zoomertrack.xml
+flyHomo|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/flyHomo.xml
+humanHomo|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/humanHomo.xml
+yeastHomo|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/yeastHomo.xml
+pfamBlast|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/pfamBlast.xml
+rfamBlast|monosigaovata|build2|http://dev.utgenome.org/~utgb/monosigaovata/tracks/build2/rfamBlast.xml
+BaseColor|neurospora|broad7|http://dev.utgenome.org/~utgb//neurospora/genome_browser/tracks/basecolor/basecolortrack.xml
+Detailed Methylation Track 20070907-1|neurospora|broad7|http://itolab2.cb.k.u-tokyo.ac.jp/methylation_track/test/detailed_methylation_track.xml
+Overview Track|neurospora|broad7|http://dev.utgenome.org/~utgb//neurospora/genome_browser/tracks/overview/overview.xml
+Perspective Methylation Track 20070907-1|neurospora|broad7|http://itolab2.cb.k.u-tokyo.ac.jp/methylation_track/test/perspective_methylation_track.xml
+Zooming Track|neurospora|broad7|http://dev.utgenome.org/~utgb//neurospora/genome_browser/tracks/zoomer/zoomertrack.xml
+bisulfiteMappedTrack|neurospora|broad7|http://dev.utgenome.org/~utgb/neurospora/tracks/broad7/Meth.xml
+predictedTranscript|neurospora|broad7|http://dev.utgenome.org/~utgb/neurospora/tracks/broad7/transcript.xml
+}}}