UTGB Medaka Setup

• see also Devel/Setup

• SVN repository: ​http://dev.utgenome.org/svn/utgb/trunk/UTGBMedaka
  • This folder contains Eclipse project files, checkout this folder as an Eclipse project

Setup the web server (For administrators)

• Install ​Tomcat
• Build JK2 (tomcat-apache connector) from source: ​http://tomcat.apache.org/connectors-doc/
  • Install httpd-devel with yum
• JK2 build process

  in jk2-src
  > cd native;
  > ./configure --with-apxs=/usr/sbin/apxs
  > make
  > sudo make install 
  

• Tomcat Startup script (/etc/init.d/tomcat)

  #!/bin/sh
  #
  # Startup script for the tomcat
  #
  # chkconfig: 345 80 15
  # description: Tomcat is a Servlet+JSP Engine.
  
  # Source function library.
  . /etc/rc.d/init.d/functions
  
  export JAVA_HOME=/usr/java/jdk
  export CATALINA_HOME=/usr/share/tomcat
  
  envsetup="export JAVA_HOME=$JAVA_HOME; export CATALINA_HOME=$CATALINA_HOME;"
  
  prog=tomcat
  lockfile=/var/lock/subsys/tomcat
  RETVAL=0
  
  start(){
      echo -n $"Starting $prog: "
      daemon --user "tomcat" "$envsetup $CATALINA_HOME/bin/startup.sh"
      RETVAL=$?
      echo
      [ $RETVAL = 0 ] && touch ${lockfile}
      return $RETVAL
  }
  stop() {
      echo -n $"Stopping $prog: "
      daemon --user "tomcat" "$envsetup $CATALINA_HOME/bin/shutdown.sh -force"
      RETVAL=$?
      echo
      [ $RETVAL = 0 ] && rm -f ${lockfile}
  }
  
  
  case "$1" in
   start)
          start
          ;;
   stop)
          stop
          ;;
   restart)
          stop
          start
          ;;
   *)
          echo $"Usage: $prog {start|stop|restart}"
          exit 1
  esac
  
  exit $RETVAL