= UTGB Medaka Setup =
 * see also [wiki:Devel/Setup]

 * SVN repository: http://dev.utgenome.org/svn/utgb/trunk/UTGBMedaka
   * This folder contains Eclipse project files, checkout this folder as an Eclipse project 
 
= Setup the web server (For administrators) =
 * Install [http://tomcat.apache.org/ Tomcat]
   * just copied the binary build folder to /home/web/local/tomcat
 * Build JK2 (tomcat-apache connector) from source: http://tomcat.apache.org/connectors-doc/
   * Install httpd-devel with yum
 * JK2 build process
{{{
in jk2-src
> cd native;
> ./configure --with-apxs=/usr/sbin/apxs
> make
> sudo make install 
}}}
 
 * Tomcat Startup script (/etc/init.d/tomcat)
   * > sudo chkconfig tomcat on
   * edit JAVA_HOME and CATALINA_HOME environment variables 
{{{

#!/bin/sh
#
# Startup script for the tomcat
#
# chkconfig: 345 80 15
# description: Tomcat is a Servlet+JSP Engine.

# Source function library.
. /etc/rc.d/init.d/functions

export JAVA_HOME=/usr/java/jdk
export CATALINA_HOME=/usr/share/tomcat

envsetup="export JAVA_HOME=$JAVA_HOME; export CATALINA_HOME=$CATALINA_HOME;"

prog=tomcat
lockfile=/var/lock/subsys/tomcat
RETVAL=0

start(){
    echo -n $"Starting $prog: "
    daemon --user "tomcat" "$envsetup $CATALINA_HOME/bin/startup.sh"
    RETVAL=$?
    echo
    [ $RETVAL = 0 ] && touch ${lockfile}
    return $RETVAL
}
stop() {
    echo -n $"Stopping $prog: "
    daemon --user "tomcat" "$envsetup $CATALINA_HOME/bin/shutdown.sh -force"
    RETVAL=$?
    echo
    [ $RETVAL = 0 ] && rm -f ${lockfile}
}


case "$1" in
 start)
        start
        ;;
 stop)
        stop
        ;;
 restart)
        stop
        start
        ;;
 *)
        echo $"Usage: $prog {start|stop|restart}"
        exit 1
esac

exit $RETVAL
}}}

 * install [http://ant.apache.org ANT]