wiki:UTGBMedaka/Manual

Version 7 (modified by leo, 18 years ago) (diff)

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UTGB Medaka User Manual

The University of Tokyo Medaka Genome Browser (UTGB Medaka) is a web-based database browser, which provides various information related to medaka genomes, including assembly sequences, genes, clones, homologus genome sequences to other species, etc.

The distinctive features of UTGB Medaka are as follows:

  • Highly-sophisticated web interface with drag & drop and resize supports of database tracks without page reloading.
  • Keyword search to quickly locate your interested sequence positions.
  • Your configuration, for example, a set of displayed tracks, track frame sizes, etc. can be saved as a file, and you can restore the browser state from the file.

Browser Interface

UTGB's interface has several tracks that can be used to browse genome sequences, genes, SNPs, etc.

Track Frame

  • http://utgenome.org/UTGBMedaka/image/icon/icon_01.gif Configuration button
    • Open the configuration panel for the track
  • http://utgenome.org/UTGBMedaka/image/icon/icon_05.gif / http://utgenome.org/UTGBMedaka/image/icon/icon_06.gif Adjust the height of the track
    • Resize the track frame height according to the track image size.
  • http://utgenome.org/UTGBMedaka/image/icon/icon_02.gif / http://utgenome.org/UTGBMedaka/image/icon/icon_03.gif Minimize/Open? track button
    • Minimize the height of the track frame
  • http://utgenome.org/UTGBMedaka/image/icon/icon_04.gif Close Button

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