| | 1 | {{{ |
| | 2 | <?xml version="1.0" ?> |
| | 3 | <track name="Track" comment="A track." url="http://localhost/cgi-bin/TilingArrayTrack.cgi"> |
| | 4 | <track_arguments> |
| | 5 | <track_argument name="database" value="test" /> |
| | 6 | <track_argument name="track_name" value="test" /> |
| | 7 | <track_argument name="revision" value="20070710" /> |
| | 8 | </track_arguments> |
| | 9 | <layers> |
| | 10 | <layer type="graphic"> |
| | 11 | <layer_arguments> |
| | 12 | <layer_argument name="track_layer" value="image" /> |
| | 13 | </layer_arguments> |
| | 14 | <requred_arguments> |
| | 15 | <required_argument name="target" type="string" /> |
| | 16 | <required_argument name="start" type="unsigned_integer" /> |
| | 17 | <required_argument name="end" type="unsigned_integer" /> |
| | 18 | <required_argument name="width" type="unsigned_integer" /> |
| | 19 | </requred_arguments> |
| | 20 | <option_arguments> |
| | 21 | <option_argument name="row_height" type="unsigned_integer" /> |
| | 22 | <option_argument name="fg_color" type="color_name" /> |
| | 23 | <option_argument name="bg_color" type="color_name" /> |
| | 24 | <option_argument name="track_type" type="select[tile,plot,graph,color_graph]" /> |
| | 25 | <option_argument name="scale" type="select[real,logarithm]" /> |
| | 26 | <option_argument name="separate_strand" type="select[TRUE,FALSE]" /> |
| | 27 | <option_argument name="unique_probe" type="select[TRUE,FALSE]" /> |
| | 28 | </option_arguments> |
| | 29 | </layer> |
| | 30 | <layer type="index"> |
| | 31 | <layer_arguments> |
| | 32 | <layer_argument name="track_layer" value="index_image" /> |
| | 33 | </layer_arguments> |
| | 34 | <requred_arguments> |
| | 35 | <required_argument name="target" type="string" /> |
| | 36 | <required_argument name="start" type="unsigned_integer" /> |
| | 37 | <required_argument name="end" type="unsigned_integer" /> |
| | 38 | <required_argument name="width" type="unsigned_integer" /> |
| | 39 | </requred_arguments> |
| | 40 | <option_arguments> |
| | 41 | <option_argument name="row_height" type="unsigned_integer" /> |
| | 42 | <option_argument name="fg_color" type="color_name" /> |
| | 43 | <option_argument name="bg_color" type="color_name" /> |
| | 44 | <option_argument name="track_type" type="select[tile,plot,graph,color_graph]" /> |
| | 45 | <option_argument name="scale" type="select[real,logarithm]" /> |
| | 46 | <option_argument name="separate_strand" type="select[TRUE,FALSE]" /> |
| | 47 | <option_argument name="unique_probe" type="select[TRUE,FALSE]" /> |
| | 48 | </option_arguments> |
| | 49 | </layer> |
| | 50 | <layer type="operation"> |
| | 51 | <layer_arguments> |
| | 52 | <layer_argument name="track_layer" value="operation" /> |
| | 53 | </layer_arguments> |
| | 54 | <requred_arguments> |
| | 55 | <required_argument name="target" type="string" /> |
| | 56 | <required_argument name="start" type="unsigned_integer" /> |
| | 57 | <required_argument name="end" type="unsigned_integer" /> |
| | 58 | <required_argument name="width" type="unsigned_integer" /> |
| | 59 | </requred_arguments> |
| | 60 | <option_arguments> |
| | 61 | <option_argument name="row_height" type="unsigned_integer" /> |
| | 62 | <option_argument name="fg_color" type="color_name" /> |
| | 63 | <option_argument name="bg_color" type="color_name" /> |
| | 64 | <option_argument name="track_type" type="select[tile,plot,graph,color_graph]" /> |
| | 65 | <option_argument name="scale" type="select[real,logarithm]" /> |
| | 66 | <option_argument name="separate_strand" type="select[TRUE,FALSE]" /> |
| | 67 | <option_argument name="unique_probe" type="select[TRUE,FALSE]" /> |
| | 68 | </option_arguments> |
| | 69 | </layer> |
| | 70 | <layer type="index_operation"> |
| | 71 | <layer_arguments> |
| | 72 | <layer_argument name="track_layer" value="index_operation" /> |
| | 73 | </layer_arguments> |
| | 74 | <requred_arguments> |
| | 75 | <required_argument name="target" type="string" /> |
| | 76 | <required_argument name="start" type="unsigned_integer" /> |
| | 77 | <required_argument name="end" type="unsigned_integer" /> |
| | 78 | <required_argument name="width" type="unsigned_integer" /> |
| | 79 | </requred_arguments> |
| | 80 | <option_arguments> |
| | 81 | <option_argument name="row_height" type="unsigned_integer" /> |
| | 82 | <option_argument name="fg_color" type="color_name" /> |
| | 83 | <option_argument name="bg_color" type="color_name" /> |
| | 84 | <option_argument name="track_type" type="select[tile,plot,graph,color_graph]" /> |
| | 85 | <option_argument name="scale" type="select[real,logarithm]" /> |
| | 86 | <option_argument name="separate_strand" type="select[TRUE,FALSE]" /> |
| | 87 | <option_argument name="unique_probe" type="select[TRUE,FALSE]" /> |
| | 88 | </option_arguments> |
| | 89 | </layer> |
| | 90 | <layer type="query" name="get average signal" desc="returns average signal intensity" > |
| | 91 | <layer_arguments> |
| | 92 | <layer_argument name="track_layer" value="query" /> |
| | 93 | <layer_argument name="get" value="signal" /> |
| | 94 | </layer_arguments> |
| | 95 | <required_arguments> |
| | 96 | <required_argument name="target" type="string" /> |
| | 97 | <required_argument name="start" type="unsigned_integer" /> |
| | 98 | <required_argument name="end" type="unsigned_integer" /> |
| | 99 | </required_arguments> |
| | 100 | </layer> |
| | 101 | <layer type="query" name="get probe" desc="returns probe info" > |
| | 102 | <layer_arguments> |
| | 103 | <layer_argument name="track_layer" value="query" /> |
| | 104 | <layer_argument name="get" value="probe" /> |
| | 105 | </layer_arguments> |
| | 106 | <required_arguments> |
| | 107 | <required_argument name="signal" type="custom type" /> <!-- [=signal], [signal1~signal2], [~signal]. [signal~] --> |
| | 108 | </required_arguments> |
| | 109 | <option_arguments> |
| | 110 | <option_argument name="target" type="string" /> |
| | 111 | <option_argument name="start" type="unsigned integer" /> |
| | 112 | <option_argument name="end" type="unsigned integer" /> |
| | 113 | </option_arguments> |
| | 114 | </layer> |
| | 115 | <layer type="query" name="get region" desc="returns region info" > |
| | 116 | <layer_arguments> |
| | 117 | <layer_argument name="track_layer" value="query" /> |
| | 118 | <layer_argument name="get" value="region" /> |
| | 119 | </layer_arguments> |
| | 120 | <required_arguments> |
| | 121 | <required_argument name="signal" type="custom type" /> <!-- [=signal], [signal1~signal2], [~signal]. [signal~] --> |
| | 122 | </required_arguments> |
| | 123 | </layer> |
| | 124 | </layers> |
| | 125 | </track> |
| | 126 | |
| | 127 | }}} |
