Track Description
related: http://www.utgenome.org/wiki/index.php?Manual%2FTrackTutorial
<?xml version="1.0" ?> <track name="Track" comment="A track." url="http://localhost/cgi-bin/TilingArrayTrack.cgi"> <track_arguments> <track_argument name="database" value="test" /> <track_argument name="track_name" value="test" /> <track_argument name="revision" value="20070710" /> </track_arguments> <layers> <layer type="graphic"> <layer_arguments> <layer_argument name="track_layer" value="image" /> </layer_arguments> <requred_arguments> <required_argument name="target" type="string" /> <required_argument name="start" type="unsigned_integer" /> <required_argument name="end" type="unsigned_integer" /> <required_argument name="width" type="unsigned_integer" /> </requred_arguments> <option_arguments> <option_argument name="row_height" type="unsigned_integer" /> <option_argument name="fg_color" type="color_name" /> <option_argument name="bg_color" type="color_name" /> <option_argument name="track_type" type="select[tile,plot,graph,color_graph]" /> <option_argument name="scale" type="select[real,logarithm]" /> <option_argument name="separate_strand" type="select[TRUE,FALSE]" /> <option_argument name="unique_probe" type="select[TRUE,FALSE]" /> </option_arguments> </layer> <layer type="index"> <layer_arguments> <layer_argument name="track_layer" value="index_image" /> </layer_arguments> <requred_arguments> <required_argument name="target" type="string" /> <required_argument name="start" type="unsigned_integer" /> <required_argument name="end" type="unsigned_integer" /> <required_argument name="width" type="unsigned_integer" /> </requred_arguments> <option_arguments> <option_argument name="row_height" type="unsigned_integer" /> <option_argument name="fg_color" type="color_name" /> <option_argument name="bg_color" type="color_name" /> <option_argument name="track_type" type="select[tile,plot,graph,color_graph]" /> <option_argument name="scale" type="select[real,logarithm]" /> <option_argument name="separate_strand" type="select[TRUE,FALSE]" /> <option_argument name="unique_probe" type="select[TRUE,FALSE]" /> </option_arguments> </layer> <layer type="operation"> <layer_arguments> <layer_argument name="track_layer" value="operation" /> </layer_arguments> <requred_arguments> <required_argument name="target" type="string" /> <required_argument name="start" type="unsigned_integer" /> <required_argument name="end" type="unsigned_integer" /> <required_argument name="width" type="unsigned_integer" /> </requred_arguments> <option_arguments> <option_argument name="row_height" type="unsigned_integer" /> <option_argument name="fg_color" type="color_name" /> <option_argument name="bg_color" type="color_name" /> <option_argument name="track_type" type="select[tile,plot,graph,color_graph]" /> <option_argument name="scale" type="select[real,logarithm]" /> <option_argument name="separate_strand" type="select[TRUE,FALSE]" /> <option_argument name="unique_probe" type="select[TRUE,FALSE]" /> </option_arguments> </layer> <layer type="index_operation"> <layer_arguments> <layer_argument name="track_layer" value="index_operation" /> </layer_arguments> <requred_arguments> <required_argument name="target" type="string" /> <required_argument name="start" type="unsigned_integer" /> <required_argument name="end" type="unsigned_integer" /> <required_argument name="width" type="unsigned_integer" /> </requred_arguments> <option_arguments> <option_argument name="row_height" type="unsigned_integer" /> <option_argument name="fg_color" type="color_name" /> <option_argument name="bg_color" type="color_name" /> <option_argument name="track_type" type="select[tile,plot,graph,color_graph]" /> <option_argument name="scale" type="select[real,logarithm]" /> <option_argument name="separate_strand" type="select[TRUE,FALSE]" /> <option_argument name="unique_probe" type="select[TRUE,FALSE]" /> </option_arguments> </layer> <layer type="query" name="get average signal" desc="returns average signal intensity" > <layer_arguments> <layer_argument name="track_layer" value="query" /> <layer_argument name="get" value="signal" /> </layer_arguments> <required_arguments> <required_argument name="target" type="string" /> <required_argument name="start" type="unsigned_integer" /> <required_argument name="end" type="unsigned_integer" /> </required_arguments> </layer> <layer type="query" name="get probe" desc="returns probe info" > <layer_arguments> <layer_argument name="track_layer" value="query" /> <layer_argument name="get" value="probe" /> </layer_arguments> <required_arguments> <required_argument name="signal" type="custom type" /> <!-- [=signal], [signal1~signal2], [~signal]. [signal~] --> </required_arguments> <option_arguments> <option_argument name="target" type="string" /> <option_argument name="start" type="unsigned integer" /> <option_argument name="end" type="unsigned integer" /> </option_arguments> </layer> <layer type="query" name="get region" desc="returns region info" > <layer_arguments> <layer_argument name="track_layer" value="query" /> <layer_argument name="get" value="region" /> </layer_arguments> <required_arguments> <required_argument name="signal" type="custom type" /> <!-- [=signal], [signal1~signal2], [~signal]. [signal~] --> </required_arguments> </layer> </layers> </track>
Last modified 17 years ago
Last modified on 10/02/07 11:43:25